Man pages for AndrewLJackson/siar
Stable Isotope Analysis in R
| allgroups | The entire set of Geese isotope data |
| bayesMVN | Bayesian MVN |
| bayestwoNorm | Bayesian Independent Normal Distributions |
| concdepdemo | Concentration dependence values for the geese demo data |
| convexhull | Convex Hull |
| correctionsdemo | Fractionation correction values for the geese data |
| geese1demo | A single group of the geese data |
| geese2demo | A multi-group version of the geese plasma data |
| hullarea | Convex Hull Area |
| laymanmetrics | Isotope-space Niche Width Metrics |
| newgraphwindow | Opens a new graphics window on a variety of platforms |
| overlap | Area of overlap between two estimated ellipses |
| panelcontour | Adds contours to a matrix plot |
| panelcor | Adds correlations to a matrix plot |
| panelhist | Adds histograms to the diagonal of a matrix plot |
| plotSigmaEllipse | Plot an ellipse based on a correlation matrix |
| popSEA | Standard Ellipse Metrics for the Population |
| siaraddcross | Plotting tool for adding isotope bi-plot data to a figure |
| siardemo | Runs the siar model and some nice plots for the siar package |
| siardensityplot | SIAR's Custom Density Plot |
| siarelicit | Elicit prior parameters for the Dirichlet distribution. |
| siarhdrs | Creates hdrs and convergence diagnostics from siar output |
| siarhistograms | Produce neat siar histograms |
| siarloaddata | Loads in siar data |
| siarmatrixplot | Matrix plots of siar output |
| siarmcmcdirichletv4 | MCMC for stable isotope data |
| siarmenu | A list of menu options for running the siar package |
| siarmultigrouprun | siar MCMC for multi-group data |
| siar-package | Stable Isotope Analysis in R. |
| siarplotdata | Produces plots of target data and sources |
| siarplotdatawrapper | Handles repeated plotting instructions for siarplotdata() |
| siarplottarget | Plots the consumers' data in isotope space |
| siarproportionbygroupplot | siar proportion plots by group |
| siarproportionbysourceplot | siar proportion plots by source |
| siarsaveoutput | Saves siar output to a file |
| siarsinglegrouprun | siar MCMC for single group data |
| siarsolomcmcv4 | MCMC for stable isotope data with only single target... |
| siarsolomultigrouprun | siar MCMC for multi-group data with only one target organism... |
| siarsolosinglegrouprun | siar MCMC for single group data with only one organism |
| siber.ellipses | The SIBER method for calculating ellipse based metrics of... |
| siber.hull.metrics | The SIBER method for calculating Convex Hull based metrics of... |
| sourcesdemo | Source (in this case plant) isotope values |
| standard.ellipse | Standard Ellipse |
