wos_sim: wos_sim run a series of resistance evolution simulations to...

In AndySouth/wos: Windows of Selection

Description

requires either a dataframe with columns for genotype, x (e.g. time) and y (e.g.mortality) or vectors of x, and yrr,ysr,yss

Usage

wos_sim(dfmortbygen = NULL, x = "concentration", y = "mortality",
  concs = c(1:5), mort_rr = c(0, 0, 0, 0.5, 1), mort_sr = c(0, 0,
  0.5, 1, 1), mort_ss = c(0, 0.5, 1, 1, 1), exposure = 0.5,
  max_gen = 1000, no_thresh = NA, startfreq = 0.001,
  dominances = c(0, 0.1, 1), plot = TRUE)

Arguments

dfmortbygen	dataframe of mortality by genotype, an alternative way of initialising function, needs genotype column
x	column name of x in dfmortbygen
y	column name of y in dfmortbygen
concs	concentration or time
mort_rr	rr mortalities 0-1
mort_sr	sr mortalities 0-1
mort_ss	ss mortalities 0-1
exposure	proportion of popn exposed to insecticide only used in the simulations
max_gen	maximum generations to use in the simulations
no_thresh	what to return as time-to-resistance if threshold not reached
startfreq	starting frequency to use in the simulations
dominances	only if there are no SR values which dominances to run
plot	whether to plot

Value

dataframe of simulation outputs

Examples

dfsim <- wos_sim()
dfsim <- wos_sim(dfmortbygen=dplyr::data_frame(conc=rep(c(1,2),3),
                               genotype=rep(c('RR','SR','SS'),each=2),
                               mort=c(0,0.2,0.4,0.6,0.8,1)),
        x='conc',y='mort')
#with no sr data runs dom0,0.1&1

AndySouth/wos documentation built on Nov. 15, 2019, 10:05 a.m.