IUPAC_CODE_MAP_extended: IUPAC code extended to consider deletions

IUPAC_CODE_MAP_extendedR Documentation

IUPAC code extended to consider deletions

Description

The IUPAC_CODE_MAP_extended named character vector contains the mapping from the IUPAC nucleotide ambiguity codes to their meaning adding the deletion code "-", this is required for computing the consensus strings between overlapping reads.

Usage

IUPAC_CODE_MAP_extended

Format

Named character vector

Source

Adapted from Biostrings object IUPAC_CODE_MAP


AngelCampos/tx_tools documentation built on Sept. 17, 2024, 1:27 a.m.