KefiR: KefiR Package

m.test

R Documentation

Automatic average/median/variance comparison function.

Description

Automatic average/median/variance comparison function.

Usage

m.test(
  data,
  cat,
  alpha = 0.05,
  verbose = TRUE,
  return = TRUE,
  paired = FALSE,
  control = c(),
  maxcat = 50,
  plot = TRUE,
  silent = TRUE,
  boot = TRUE,
  iter = 500,
  conf = 0.95,
  code = FALSE,
  debug = FALSE
)

Arguments

`data`	numerical vector
`cat`	category vector
`alpha`	p-value threshold value for all the tests.
`verbose`	to display the full reasoning of the analysis.
`return`	allows to return the results of pairwise analysis (p-values and groups).
`paired`	(under development) to allow the analysis of matched data.
`control`	name of the category that will eventually be used as a control.
`maxcat`	maximum number of categories allowed. When this number is high, some tests may return an error message.
`plot`	to display the distribution of the data.
`silent`	for displaying or not warnings.
`boot`	to activate the boostrap on 'mean' and 'median'.
`iter`	number f iterations (boot==TRUE).
`conf`	confidence level of bootstrap.
`code`	allows to display the simplified R source code to be able to do the same R study step by step.
`debug`	when m.test return error.

Value

m.test() runs a decision tree to choose the most appropriate test series for sample comparison.

She chooses the tests, justifies her choices.

It can output groups of means or a comparison to a control.

Finally, it will measure the robustness of the results by bootstrap.

Examples

data(iris)
m.test(iris[,1],iris[,5],verbose=TRUE, return=TRUE)
m.test(iris[1:100,1],iris[1:100,5],verbose=TRUE, return=TRUE)
m.test(iris[,2],iris[,5],verbose=TRUE, return=TRUE)
m.test(iris[,3],iris[,5],verbose=TRUE, return=TRUE)
m.test(iris[,4],iris[,5],verbose=TRUE, plot=FALSE, return=FALSE, boot=FALSE)
m.test(iris[,1],iris[,5],verbose=TRUE, return=TRUE,control="setosa")
m.test(iris[,2],iris[,5],verbose=TRUE, return=TRUE,control="virginica")
m.test(iris[,3],iris[,5],verbose=TRUE, return=TRUE,control="setosa")
m.test(iris[,4],iris[,5],verbose=TRUE, return=TRUE,control="setosa")

Antoine-Masse/KefiR documentation built on Feb. 22, 2024, 5:54 a.m.