Files in AntonelliLab/restez
Create and Query a Local Copy of 'GenBank' in R
.Rbuildignore
.gitattributes
.github/.gitignore
.github/CONTRIBUTING.md
.github/issue_template.md
.github/pull_request_template.md
.github/workflows/R-CMD-check.yaml
.gitignore
CONTRIBUTING.md
CRAN-SUBMISSION
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/biomartr-tools.R
R/connection-tools.R
R/db-get-tools.R
R/db-setup-tools.R
R/download-tools.R
R/entrez-tools.R
R/extract-tools.R
R/filepath-tools.R
R/gb-get-tools.R
R/gb-setup-tools.R
R/log-tools.R
R/mock-tools.R
R/print-tools.R
R/rentrez-wrappers.R
R/restez.R
R/status-tools.R
R/test-tools.R
R/wrappers.R
README.Rmd
README.md
_pkgdown.yml
codemeta.json
cran-comments.md
data/record.rda
examples/count_db_ids.R
examples/db_delete.R
examples/demo_db_create.R
examples/entrez_fetch.R
examples/gb_definition_get.R
examples/gb_extract.R
examples/gb_fasta_get.R
examples/gb_organism_get.R
examples/gb_record_get.R
examples/gb_sequence_get.R
examples/gb_version_get.R
examples/is_in_db.R
examples/list_db_ids.R
examples/restez_path_get.R
examples/restez_ready.R
examples/restez_status.R
inst/CITATION
logo.png
man/add_rcrd_log.Rd
man/cat_line.Rd
man/char.Rd
man/check_connection.Rd
man/cleanup.Rd
man/connected.Rd
man/connection_get.Rd
man/count_db_ids.Rd
man/db_create.Rd
man/db_delete.Rd
man/db_download.Rd
man/db_download_intern.Rd
man/db_sqlngths_get.Rd
man/db_sqlngths_log.Rd
man/demo_db_create.Rd
man/dir_size.Rd
man/dwnld_path_get.Rd
man/dwnld_rcrd_log.Rd
man/entrez_fasta_get.Rd
man/entrez_fetch.Rd
man/entrez_gb_get.Rd
man/extract_accession.Rd
man/extract_by_patterns.Rd
man/extract_clean_sequence.Rd
man/extract_definition.Rd
man/extract_features.Rd
man/extract_inforecpart.Rd
man/extract_keywords.Rd
man/extract_locus.Rd
man/extract_organism.Rd
man/extract_seqrecpart.Rd
man/extract_sequence.Rd
man/extract_version.Rd
man/file_download.Rd
man/filename_log.Rd
man/flatfile_read.Rd
man/gb_build.Rd
man/gb_definition_get.Rd
man/gb_df_create.Rd
man/gb_df_generate.Rd
man/gb_extract.Rd
man/gb_fasta_get.Rd
man/gb_organism_get.Rd
man/gb_record_get.Rd
man/gb_sequence_get.Rd
man/gb_sql_add.Rd
man/gb_sql_query.Rd
man/gb_version_get.Rd
man/gbrelease_check.Rd
man/gbrelease_get.Rd
man/gbrelease_log.Rd
man/has_data.Rd
man/identify_downloadable_files.Rd
man/is_in_db.Rd
man/last_add_get.Rd
man/last_dwnld_get.Rd
man/last_entry_get.Rd
man/latest_genbank_release.Rd
man/latest_genbank_release_notes.Rd
man/list_db_ids.Rd
man/message_missing.Rd
man/mock_def.Rd
man/mock_gb_df_generate.Rd
man/mock_org.Rd
man/mock_rec.Rd
man/mock_seq.Rd
man/ncbi_acc_get.Rd
man/predict_datasizes.Rd
man/print.status.Rd
man/readme_log.Rd
man/record.Rd
man/restez.Rd
man/restez_connect.Rd
man/restez_disconnect.Rd
man/restez_path_check.Rd
man/restez_path_get.Rd
man/restez_path_set.Rd
man/restez_path_unset.Rd
man/restez_ready.Rd
man/restez_rl.Rd
man/restez_status.Rd
man/search_gz.Rd
man/seshinfo_log.Rd
man/setup.Rd
man/slctn_get.Rd
man/slctn_log.Rd
man/sql_path_get.Rd
man/stat.Rd
man/status_class.Rd
man/testdatadir_get.Rd
other/demonstration_1.R
other/dev.R
other/generate_records_data.R
other/make_sure_things_work.R
other/phylotar_demo.R
other/random_file_tester.R
other/rodent_build_times.rds
other/rodent_db.R
other/spell_check.R
other/viral_lookup.R
paper/outline.png
paper/paper.bib
paper/paper.html
paper/paper.md
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
revdep/.gitignore
revdep/README.md
revdep/cran.md
revdep/email.yml
revdep/failures.md
revdep/problems.md
tests/test-all.R
tests/testthat/data/records.RData
tests/testthat/data/release_notes_gb224.RData
tests/testthat/test-biomartr-tools.R
tests/testthat/test-connection-tools.R
tests/testthat/test-db-tools.R
tests/testthat/test-entrez-tools.R
tests/testthat/test-extract-tools.R
tests/testthat/test-filepath-tools.R
tests/testthat/test-gb-setup-tools.R
tests/testthat/test-get-tools.R
tests/testthat/test-log-tools.R
tests/testthat/test-mock-tools.R
tests/testthat/test-print-tools.R
tests/testthat/test-rentrez-wrappers.R
tests/testthat/test-status-tools.R
tests/testthat/test-test-tools.R
vignettes/1_rodents.Rmd
vignettes/1_rodents.Rmd.orig
vignettes/2_search_and_fetch.Rmd
vignettes/2_search_and_fetch.Rmd.orig
vignettes/3_parsing.Rmd
vignettes/3_parsing.Rmd.orig
vignettes/4_phylotar.Rmd
vignettes/4_phylotar.Rmd.orig
vignettes/5_tips_and_tricks.Rmd
vignettes/5_tips_and_tricks.Rmd.orig
vignettes/precompile.R
vignettes/restez.Rmd
