R/GeoOrigins-package.R

In ArdernHB/GeoOrigins: Spatial exploration of trait boundaries and provenance

#' GeoOrigins: functions for spatial exploration of trait boundaries and specimen provenance
#'
#' GeoOrigins provides functions for provenancing specimens of unknown geographic origin to spatial regions. It also
#' allows for the exploration and identification of trait boundaries from a distance matrix. The package includes
#' three datasets, which are worked through in an accompanying vignette.
#'
#' For more information, updates or queires please see:
#' \url{https://github.com/ArdernHB/GeoOrigins}
#'
#' @section GeoOrigins functions:
#'
#' Array2Mat
#'
#' BoundaryFinder
#'
#' BoundaryFinderPar
#'
#' GeoDist2PointTable
#'
#' IDbyDistanceDistInput
#'
#' IDbyDistanceDistInputCCV
#'
#' IDbyDistanceDistInputCCVPar
#'
#' IDbyDistanceRawData
#'
#' IDbyDistanceRawDataCCV
#'
#' IDbyDistanceRawDataCCVPar
#'
#' Mat2Array
#'
#' PlotBoundaries
#'
#' ProcDistanceTable
#'
#' ProcDistanceTablePar
#'
#' TraitBoundaryStats
#'
#' TraitBoundaryStatsPar
#'
#' @section Datasets:
#' Rpraetor: geometric morphometric dataset of tooth outlines of Rattus praetor (Large New Guinea spiny rat)
#'
#' Marvalis: geometric morphometric dataset of tooth outlines of Microtus arvalis (Common vole)
#'
#' Fteydea: Song distance dataset of Fingilla teydae (Tenerifian Blue Chaffinch)
#'
#' @section Dataset sources:
#' Hulme-Beaman, A., Cucchi, T., Evin, A., Searle, J. B., & Dobney, K. (2018). Exploring Rattus praetor (Rodentia, Muridae) as a possible species complex using geometric morphometrics on dental morphology. Mammalian Biology, 92(1), 62-67.
#' https://doi.org/10.1016/j.mambio.2018.04.002
#'
#' Cucchi, T., Barnett, R., Martinkova, N., Renaud, S., Renvoise, E., Evin, A., ... & Quere, J. P. (2014). The changing pace of insular life: 5000 years of microevolution in the Orkney vole (Microtus arvalis orcadensis). Evolution, 68(10), 2804-2820.
#' https://doi.org/10.1111/evo.12476
#'
#'
#' @author
#' Ardern Hulme-Beaman
#' Anna Rudzinski
#'
#' @section Maintainer:
#' Ardern Hulme-Beaman <ardernhb@gmail.com>
#'
#'
#' @docType package
#' @name GeoOrigins
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