encode_df_full: ENCODE file metadata, Full version

In ArnaudDroitLab/ENCODExplorerData: A compilation of ENCODE metadata

Description

Metadata for the files made available by ENCODE database as a data.table object. See inst/scripts/make-data.R for the generation process. encode_df_full contains all processed metadata columns, including content md5sums, cloud URLs, etc. Operations on encode_df_full will take longer than those on encode_df_lite, but may be required if some of the extra metadata columns are necessary for your needs.

Format

A data table

See Also

generate_encode_df_full, encode_df_lite

Examples

    # You can use AnnotationHub to retrieve encode_df_full.
    library(AnnotationHub)
    hub <- AnnotationHub()
    myfiles <- subset(hub, title=="ENCODE File Metadata (Full, 2019-04-12 build)")

    # You can then have a look at the metadata of the retrieved object.
    myfiles

    # Finally, you can access the data.table itself by indexing into the 
    # object returned by subset.
    myfiles[[1]]

ArnaudDroitLab/ENCODExplorerData documentation built on Oct. 8, 2020, 1:32 a.m.