Files in ArnaudDroitLab/consensusSeekeR
Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/consensusSeekeR.R
R/findConsensusPeakRegions.R
R/findConsensusPeakRegionsIntern.R
R/readNarrowPeak.R
README.md
consensusSeekeR.Rproj
data/A549_CTCF_MYJ_NarrowPeaks_partial.RData
data/A549_CTCF_MYJ_Peaks_partial.RData
data/A549_CTCF_MYN_NarrowPeaks_partial.RData
data/A549_CTCF_MYN_Peaks_partial.RData
data/A549_FOSL2_01_NarrowPeaks_partial.RData
data/A549_FOSL2_01_Peaks_partial.RData
data/A549_FOXA1_01_NarrowPeaks_partial.RData
data/A549_FOXA1_01_Peaks_partial.RData
data/A549_NR3C1_CFQ_NarrowPeaks_partial.RData
data/A549_NR3C1_CFQ_Peaks_partial.RData
data/A549_NR3C1_CFR_NarrowPeaks_partial.RData
data/A549_NR3C1_CFR_Peaks_partial.RData
data/A549_NR3C1_CFS_NarrowPeaks_partial.RData
data/A549_NR3C1_CFS_Peaks_partial.RData
data/NOrMAL_nucleosome_positions.RData
data/NOrMAL_nucleosome_ranges.RData
data/NucPosSimulator_nucleosome_positions.RData
data/NucPosSimulator_nucleosome_ranges.RData
data/PING_nucleosome_positions.RData
data/PING_nucleosome_ranges.RData
inst/CITATION
inst/extdata/A549_FOSL2_ENCSR000BQO_MZW_part_chr_1_and_12.narrowPeak
inst/extdata/Hosa_A549_FOSL2_ENCSR000BQO_MZT_peaks_part_chr1_and_12.narrowPeak
inst/extdata/Hosa_A549_FOSL2_ENCSR000BQO_MZW_peaks_part_chr1_and_12.narrowPeak
inst/unitTests/Makefile.R
inst/unitTests/test_findConsensusPeakRegions.R
inst/unitTests/test_findConsensusPeakRegionsIntern.R
inst/unitTests/test_readNarrowPeak.R
man/A549_CTCF_MYJ_NarrowPeaks_partial.Rd
man/A549_CTCF_MYJ_Peaks_partial.Rd
man/A549_CTCF_MYN_NarrowPeaks_partial.Rd
man/A549_CTCF_MYN_Peaks_partial.Rd
man/A549_FOSL2_01_NarrowPeaks_partial.Rd
man/A549_FOSL2_01_Peaks_partial.Rd
man/A549_FOXA1_01_NarrowPeaks_partial.Rd
man/A549_FOXA1_01_Peaks_partial.Rd
man/A549_NR3C1_CFQ_NarrowPeaks_partial.Rd
man/A549_NR3C1_CFQ_Peaks_partial.Rd
man/A549_NR3C1_CFR_NarrowPeaks_partial.Rd
man/A549_NR3C1_CFR_Peaks_partial.Rd
man/A549_NR3C1_CFS_NarrowPeaks_partial.Rd
man/A549_NR3C1_CFS_Peaks_partial.Rd
man/NOrMAL_nucleosome_positions.Rd
man/NOrMAL_nucleosome_ranges.Rd
man/NucPosSimulator_nucleosome_positions.Rd
man/NucPosSimulator_nucleosome_ranges.Rd
man/PING_nucleosome_positions.Rd
man/PING_nucleosome_ranges.Rd
man/consensusSeekeR-package.Rd
man/findConsensusPeakRegions.Rd
man/findConsensusPeakRegionsForOneChrom.Rd
man/findConsensusPeakRegionsValidation.Rd
man/isInteger.Rd
man/readNarrowPeakFile.Rd
man/refineRegion.Rd
tests/runTests.R
vignettes/consensusSeekeR.Rmd
vignettes/consensusSeekeR.bibtex
vignettes/figures/NR3C1_consensus.jpg
vignettes/figures/ctcf_consensus.jpg
vignettes/figures/extendNew.jpg
vignettes/figures/nucleosomes.jpg
vignettes/figures/peak_and_region.jpg
vignettes/figures/shrink.jpg
vignettes/figures/sizeEffect.jpg
