dijkstra: Dijkstra's algorithm for connecting a source to one or more...

Description Usage Arguments Value

Description

Runs Dijkstra's graph search algorithm using the provided path scoring function

Usage

1
2
dijkstra(src, trgts, fscore = lpgm, blacklist = c(), max_nodes = 100,
  min_ev = 3)

Arguments

src

Source gene

trgts

Vector of target genes

fscore

Scoring function that accepts a vector of evidence counts

blacklist

Vector of genes that should NOT be expanded

max_nodes

Maximum number of nodes to expand (Default: 100)

min_ev

Minimum evidence count to consider

Value

A set of paths from src to each element of trgts


ArtemSokolov/indRa documentation built on June 5, 2019, 11:01 a.m.