docs/source/database.md

In ArthurPERE/RNASeqDE:

Database

The database used must be in csv or txt file, please do not give an excel file.

The database must be an comptage table from the method RNA-Seq. For the multimapped sequences, for the moment we do not implement the use for RSEM

Parameters

You have few parameters to enter before you can use the continue button : 1. Groups : the flowcell, ... 2. Conditions : see later 3. Contrast : see later

After you fill all the parameters, you can download the parameters to the format json. To reenter the parameters, you have a box to push that inside the site.

If you use that option, all the parameters you fill previously will be put in the parameters.

The parameters had been presented on the form of a table. The table of the groups and conditions have one line you can edit, the contrast one have multiple lines you can edit.

Like on excel, you can copy multiple cell and paste it by clicking on the little blue square and sweeping it to others cells.

To edit a cell : 1. Select the cell 2. Either tape something or double click on it 3. Edit the cell 4. To end the editing click on another

Groups

Conditions

Contrast

ArthurPERE/RNASeqDE documentation built on Sept. 17, 2019, 7:34 p.m.