HDmethods: HDmethods

In ArthurPERE/biomass: Estimating Aboveground Biomass and Its Uncertainty in Tropical Forests

Description

Methods used for modeling height-diameter relationship

Usage

loglogFunction(data, method)

michaelisFunction(data, weight = NULL)

weibullFunction(data, weight = NULL)

Arguments

data	Dataset with the informations of height (H) and diameter (D)
method	In the case of the loglogFunction, the model is to be chosen between log1, log2 or log3.
weight	(optional) Vector indicating observation weights in the model.

Details

These functions model the relationship between tree height (H) and diameter (D). loglogFunction Compute three types of log model (log, log2 and log3) to predict H from D. The model can be:

• log 1: log(H) = a+ b*log(D) (equivalent to a power model)

• log 2: log(H) = a+ b*log(D) + c*log(D)^2

• log 3: log(H) = a+ b*log(D) + c*log(D)^2 + d*log(D)^3

michaelisFunction Construct a Michaelis Menten model of the form:

H = (A * D) / (B + D)

(A and B are the model parameters to be estimated)

weibullFunction Construct a three parameter Weibull model of the form:

H = a*(1-exp(-(D/b)^c))

(a, b, c are the model parameters to be estimated)

Value

All the functions give an output similar to the one given by stats::lm(), obtained for michaelisFunction and weibullFunction from minpack.lm::nlsLM).

Author(s)

Maxime REJOU-MECHAIN, Ariane TANGUY

References

Michaelis, L., & Menten, M. L. (1913). Die kinetik der invertinwirkung. Biochem. z, 49(333-369), 352. Weibull, W. (1951). Wide applicability. Journal of applied mechanics, 103. Baskerville, G. L. (1972). Use of logarithmic regression in the estimation of plant biomass. Canadian Journal of Forest Research, 2(1), 49-53.

See Also

modelHD(), lmfor::HDmodels()

ArthurPERE/biomass documentation built on May 18, 2019, 2:33 a.m.