CloneDeMix_core: Decomposing the subclonal structure of tumors with two-way...

In AshTai/CloneDeMix: Clone deconvolution via DNA sequencing

Description

The core function of CloneDeMix.

Usage

CloneDeMix_core(dataX, threshold = 10^-5, CNVstate = c(0:4), numbG = 4,
  baseline = NULL, iterationC = 10^3)

Arguments

dataX	DNA count of a tumor sample.
threshold	The threhold of convergence. Default is 10^-5.
CNVstate	A vector of considered copy number state.
numbG	The number of subclones.
baseline	A vector of length s. It's a count profile from the paired normal sample. If it's empty, the baseline is calculated from sample mean.
iterationC	Maximum number of iterations. Default is 1000.

Value

A list containing MCP vector, the weight of copy number state, error rate, AIC, and BIC.

Author(s)

An-Shun Tai [e-mail]

AshTai/CloneDeMix documentation built on May 28, 2019, 11:04 a.m.