In AustralianAntarcticDivision/ZooScatR: ZooScatR - Acoustic Scattering of zooplankton using DWBA
knitr::opts_chunk$set(echo = TRUE)
library(knitr)
This is a non-exhaustive table with previously reported model parameter values. Large parts of the table are copied from Lavery et al. [-@lavery_determining_2007] and Lawson et al. [-@lawson_acoustically-inferred_2004].
Some taxa are repsented more than once, where multiple literature recodrings have been found. It is recommended to throughly study the cited and other literature before using any of the presented values.
It should also be noted that L/a values might be fluctuating largely due to:
- geographical location [@kogeler_density-and_1987; @lawson_acoustically-inferred_2004]
- life history traits of the taxon or seasonality [@lawson_acoustically-inferred_2004; @kogeler_density-and_1987]
g and h in some species have been reported to fluctuate with:
- temperature [@chu_measurements_2005]
- size classes [@chu_measurements_2005; @lawson_acoustically-inferred_2004; @kogeler_density-and_1987]
- depth [@chu_measurements_2005]
- seasonality (for example due to changes in lipid content) [@kogeler_density-and_1987]
- state of the analysed individuals (preseverd or alive) [@kogeler_density-and_1987].
g and h are important variables in the model. It has been suggested that the effects of varying g and h can be of the same order of magnitude as the orientation [@stanton_average_1993].
taxa <- c("Euphausiids and Decapod Shrimp",
"Larval Crustacean",
"Amphipods",
"Ostracods",
"Chaetognaths and Polychaetes",
"Gymnosome Pteropods (Clione)",
"Salps",
"Copepods",
"Medusae",
"Eggs",
"Calanus finmarchicus",
"Calanus hyperboreus",
"Acartia clausi",
"Calanus marshallae",
"Meganyctiphanes norvegica",
"Thysanoessa",
"Calanus",
"General",
"Euphausia superba",
"Euphausia crystallorophias",
"Neocalanus cristatus",
"Neocalanus plumchrus",
"Ammodytes personatus (juvenile)",
"Ammodytes personatus (adult)",
"Salpa thompsoni")
La <- c("10.5",
"2.55 [@lawson_acoustically-inferred_2004]",
"3.00 [@lawson_acoustically-inferred_2004]",
2.55,
17.15,
1.83,
4.0,
2.55,
NA,
NA,
NA,
NA,
NA,
NA,
NA,
NA,
NA,
NA,
NA,
NA,NA,NA,NA,NA,10)
Orientation <- c("N(20,20) [@benfield_estimating_2000], average ~0 [@lawson_improved_2006]",
"N(0.30) [@lawson_acoustically-inferred_2004]",
"N(0,30) [@lawson_acoustically-inferred_2004]",
"N(0,30)",
"N(0,30)",
"N(0,30)",
"N(0,30)",
"N(90,30)",
NA,
NA,
NA,
NA,
NA,
NA,
NA,
NA,
NA,
NA,
NA,
NA,
NA,
NA,
NA,
NA,"Uniform [0, π]")
g <- c("$$\\frac{5.485*L}{10^4}+1.002; L>25$$ $$1.016; L<25$$ [@lawson_acoustically-inferred_2004]",
"1.058 [@lawson_acoustically-inferred_2004]",
"1.058 [@lawson_acoustically-inferred_2004]",
"1.03 [pers. comm. Dezhang Chu in @lavery_determining_2007]",
"1.03 [pers. comm. Dezhang Chu in @lavery_determining_2007]",
"1.03 [pers. comm. Dezhang Chu in @lavery_determining_2007]",
"1.004 [@stanton_acoustic_1994]",
"1.02 [pers. comm. Dezhang Chu in @lavery_determining_2007]",
"1.02 [inferred from @monger_sound_1998 as reported in @lavery_determining_2007]",
"0.979 [@chu_material_2003]",
"1.025 - 1.029 g/cm^3^ depending on season [@kogeler_density-and_1987]",
"1.022 - 1.036 g/cm^3^ depending on season [@kogeler_density-and_1987]",
"1.04 g/cm^3^ [@greenlaw_acoustical_1979]",
"1.04 g/cm^3^ [@greenlaw_acoustical_1979]",
"1.057 g/cm^3^ [@kils_swimming_1981]",
"1.052 - 1.074 g/cm^3^ depending on season and species [@kogeler_density-and_1987]",
"1.022 - 1.036 g/cm^3^ depending on season and species [@kogeler_density-and_1987]",
"0.9402 - 1.051 [@chu_measurements_2005]",
"1.0241 [@chu_measurements_2005], 1.0357 [@foote_speed_1990]",
"1.009 & 1.000 depth dependent [@chu_measurements_2005]",
"0.997 - 1.009 [@matsukura_measurements_2009]",
"0.995 - 1.009 [@matsukura_measurements_2009]",
"1.021 [@yasuma_density_2009]",
"1.032 [@yasuma_density_2009]",
"1 - 1.0039 [@wiebe_acoustic_2009]"
)
h <- c("$$\\frac{5.94*2L}{10^ 4}; L>25$$ $$1.019; L<25$$ [@lawson_acoustically-inferred_2004]",
"1.058 [@lawson_acoustically-inferred_2004]",
"1.058 [@lawson_acoustically-inferred_2004]",
"1.03 [pers. comm. Dezhang Chu in @lavery_determining_2007]",
"1.03 [pers. comm. Dezhang Chu in @lavery_determining_2007]",
"1.03 [pers. comm. Dezhang Chu in @lavery_determining_2007]",
"1.004 [@stanton_acoustic_1994]",
"1.058 [@chu_inference_2000]",
"1.02 [inferred from @monger_sound_1998 as reported in @lavery_determining_2007]",
"1.017 [@stanton_simple_1989]",
"1.027 (mixture C. finmarchicus and C. hyperboreus) [@kogeler_density-and_1987]",
"1.027 (mixture C. finmarchicus and C. hyperboreus) [@kogeler_density-and_1987]",
"NA",
"1.007 [@kogeler_density-and_1987]",
"1.030 [@kogeler_density-and_1987]",
"1.026 [@kogeler_density-and_1987]",
"1.027 [@kogeler_density-and_1987]; 0.949 & 1.013 - Depth dependent [@chu_measurements_2005]",
"0.949 - 1.096 [@chu_measurements_2005]",
"1.031 [@chu_measurements_2005], 1.0279 [@foote_speed_1990]",
"1.025 & 1.029 depth dependent [@chu_measurements_2005]",
"1.013 - 1.025 [@matsukura_measurements_2009]",
"1.006 - 1.021 [@matsukura_measurements_2009]",
"1.02 [@yasuma_density_2009]",
"1.02 [@yasuma_density_2009]",
"1.006 - 1.0201 [@wiebe_acoustic_2009]")
model <- c("DWBA uniformly-bent cylinder","DWBA uniformly-bent cylinder","DWBA uniformly-bent cylinder","DWBA uniformly-bent cylinder","DWBA uniformly-bent cylinder","DWBA uniformly-bent cylinder","DWBA uniformly-bent cylinder","DWBA prolate spheroid", "DWBA two prolate spheroid surfaces", "High-pass fluid sphere","NA","NA","NA","NA","NA","NA","NA",NA,NA,NA,"DWBA Deformed Cylinder","DWBA Deformed Cylinder",NA,NA,"DWBA")
gh <- as.data.frame(cbind(taxa,La,Orientation,g,h,model))
names(gh)<- c("Taxon",
"Length-to-girth ratio $\\frac{L}{a}$",
"Orientation",
"Density Contrast g",
"Sound Speed Contrast h",
"Scattering model")
kable(gh)
#datatable(gh)
References
AustralianAntarcticDivision/ZooScatR documentation built on Aug. 13, 2022, 1:21 a.m.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
knitr::opts_chunk$set(echo = TRUE) library(knitr)
This is a non-exhaustive table with previously reported model parameter values. Large parts of the table are copied from Lavery et al. [-@lavery_determining_2007] and Lawson et al. [-@lawson_acoustically-inferred_2004].
Some taxa are repsented more than once, where multiple literature recodrings have been found. It is recommended to throughly study the cited and other literature before using any of the presented values.
It should also be noted that L/a values might be fluctuating largely due to:
- geographical location [@kogeler_density-and_1987; @lawson_acoustically-inferred_2004]
- life history traits of the taxon or seasonality [@lawson_acoustically-inferred_2004; @kogeler_density-and_1987]
g and h in some species have been reported to fluctuate with:
- temperature [@chu_measurements_2005]
- size classes [@chu_measurements_2005; @lawson_acoustically-inferred_2004; @kogeler_density-and_1987]
- depth [@chu_measurements_2005]
- seasonality (for example due to changes in lipid content) [@kogeler_density-and_1987]
- state of the analysed individuals (preseverd or alive) [@kogeler_density-and_1987].
g and h are important variables in the model. It has been suggested that the effects of varying g and h can be of the same order of magnitude as the orientation [@stanton_average_1993].
taxa <- c("Euphausiids and Decapod Shrimp", "Larval Crustacean", "Amphipods", "Ostracods", "Chaetognaths and Polychaetes", "Gymnosome Pteropods (Clione)", "Salps", "Copepods", "Medusae", "Eggs", "Calanus finmarchicus", "Calanus hyperboreus", "Acartia clausi", "Calanus marshallae", "Meganyctiphanes norvegica", "Thysanoessa", "Calanus", "General", "Euphausia superba", "Euphausia crystallorophias", "Neocalanus cristatus", "Neocalanus plumchrus", "Ammodytes personatus (juvenile)", "Ammodytes personatus (adult)", "Salpa thompsoni") La <- c("10.5", "2.55 [@lawson_acoustically-inferred_2004]", "3.00 [@lawson_acoustically-inferred_2004]", 2.55, 17.15, 1.83, 4.0, 2.55, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA,NA,NA,NA,NA,10) Orientation <- c("N(20,20) [@benfield_estimating_2000], average ~0 [@lawson_improved_2006]", "N(0.30) [@lawson_acoustically-inferred_2004]", "N(0,30) [@lawson_acoustically-inferred_2004]", "N(0,30)", "N(0,30)", "N(0,30)", "N(0,30)", "N(90,30)", NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA,"Uniform [0, π]") g <- c("$$\\frac{5.485*L}{10^4}+1.002; L>25$$ $$1.016; L<25$$ [@lawson_acoustically-inferred_2004]", "1.058 [@lawson_acoustically-inferred_2004]", "1.058 [@lawson_acoustically-inferred_2004]", "1.03 [pers. comm. Dezhang Chu in @lavery_determining_2007]", "1.03 [pers. comm. Dezhang Chu in @lavery_determining_2007]", "1.03 [pers. comm. Dezhang Chu in @lavery_determining_2007]", "1.004 [@stanton_acoustic_1994]", "1.02 [pers. comm. Dezhang Chu in @lavery_determining_2007]", "1.02 [inferred from @monger_sound_1998 as reported in @lavery_determining_2007]", "0.979 [@chu_material_2003]", "1.025 - 1.029 g/cm^3^ depending on season [@kogeler_density-and_1987]", "1.022 - 1.036 g/cm^3^ depending on season [@kogeler_density-and_1987]", "1.04 g/cm^3^ [@greenlaw_acoustical_1979]", "1.04 g/cm^3^ [@greenlaw_acoustical_1979]", "1.057 g/cm^3^ [@kils_swimming_1981]", "1.052 - 1.074 g/cm^3^ depending on season and species [@kogeler_density-and_1987]", "1.022 - 1.036 g/cm^3^ depending on season and species [@kogeler_density-and_1987]", "0.9402 - 1.051 [@chu_measurements_2005]", "1.0241 [@chu_measurements_2005], 1.0357 [@foote_speed_1990]", "1.009 & 1.000 depth dependent [@chu_measurements_2005]", "0.997 - 1.009 [@matsukura_measurements_2009]", "0.995 - 1.009 [@matsukura_measurements_2009]", "1.021 [@yasuma_density_2009]", "1.032 [@yasuma_density_2009]", "1 - 1.0039 [@wiebe_acoustic_2009]" ) h <- c("$$\\frac{5.94*2L}{10^ 4}; L>25$$ $$1.019; L<25$$ [@lawson_acoustically-inferred_2004]", "1.058 [@lawson_acoustically-inferred_2004]", "1.058 [@lawson_acoustically-inferred_2004]", "1.03 [pers. comm. Dezhang Chu in @lavery_determining_2007]", "1.03 [pers. comm. Dezhang Chu in @lavery_determining_2007]", "1.03 [pers. comm. Dezhang Chu in @lavery_determining_2007]", "1.004 [@stanton_acoustic_1994]", "1.058 [@chu_inference_2000]", "1.02 [inferred from @monger_sound_1998 as reported in @lavery_determining_2007]", "1.017 [@stanton_simple_1989]", "1.027 (mixture C. finmarchicus and C. hyperboreus) [@kogeler_density-and_1987]", "1.027 (mixture C. finmarchicus and C. hyperboreus) [@kogeler_density-and_1987]", "NA", "1.007 [@kogeler_density-and_1987]", "1.030 [@kogeler_density-and_1987]", "1.026 [@kogeler_density-and_1987]", "1.027 [@kogeler_density-and_1987]; 0.949 & 1.013 - Depth dependent [@chu_measurements_2005]", "0.949 - 1.096 [@chu_measurements_2005]", "1.031 [@chu_measurements_2005], 1.0279 [@foote_speed_1990]", "1.025 & 1.029 depth dependent [@chu_measurements_2005]", "1.013 - 1.025 [@matsukura_measurements_2009]", "1.006 - 1.021 [@matsukura_measurements_2009]", "1.02 [@yasuma_density_2009]", "1.02 [@yasuma_density_2009]", "1.006 - 1.0201 [@wiebe_acoustic_2009]") model <- c("DWBA uniformly-bent cylinder","DWBA uniformly-bent cylinder","DWBA uniformly-bent cylinder","DWBA uniformly-bent cylinder","DWBA uniformly-bent cylinder","DWBA uniformly-bent cylinder","DWBA uniformly-bent cylinder","DWBA prolate spheroid", "DWBA two prolate spheroid surfaces", "High-pass fluid sphere","NA","NA","NA","NA","NA","NA","NA",NA,NA,NA,"DWBA Deformed Cylinder","DWBA Deformed Cylinder",NA,NA,"DWBA") gh <- as.data.frame(cbind(taxa,La,Orientation,g,h,model)) names(gh)<- c("Taxon", "Length-to-girth ratio $\\frac{L}{a}$", "Orientation", "Density Contrast g", "Sound Speed Contrast h", "Scattering model") kable(gh) #datatable(gh)
References
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