getCombs: Identifies subgroupings of replicates for assessing...

In AviranLab/dStruct: Identifying differentially reactive regions from RNA structurome profiling data

Description

Identifies subgroupings of replicates for assessing within-group and between-group variation.

Usage

getCombs(reps_A, reps_B, batches = F, between_combs = NULL,
  within_combs = NULL)

Arguments

reps_A	Number of replicates of group A.
reps_B	Number of replicates of group B.
batches	Logical suggesting if replicates of group A and B were performed in batches and are labelled accordingly. If TRUE, a heterogeneous/homogeneous subset may not have multiple samples from the same batch.
between_combs	Dataframe with each column containing groupings of replicates of groups A and B, which will be used to assess between-group variation.
within_combs	Data.frame with each column containing groupings of replicates of groups A or B, which will be used to assess within-group variation.

Value

List of two dataframes, containing groupings for within-group and between-group variation.

AviranLab/dStruct documentation built on Jan. 27, 2021, 2:28 a.m.