chrom_profile: chrom_profile

In AxelitoMartin/BedMap:

Description

For each chromosome create file that let's the user plot the chromosome profile for the chromatin access and tumor mutation burden

Usage

chrom_profile(bed, gen, seg.size)

Arguments

bed	BED file with fully processed with 7 columns ("Chromosome","start","end","type","score","strand","signal").
gen	complete maf file with chromosome, chromosome start/end, sample ID
seg.size	Size of segments to be used.

Value

dat chromosome, position and their estimated chromatin access and TMB (scaled).

AxelitoMartin/BedMap documentation built on April 24, 2020, 12:02 a.m.