get_gene_chrom_TMB: get_gene_chrom_TMB
In AxelitoMartin/BedMap:
Description
Usage
Arguments
Value
View source: R/get_gene_chrom_TMB.R
Description
Combines bed files with WGS/WXS/IMPACT genes
for chromatin accessibility and TMB
Usage
1
get_gene_chrom_TMB(bed, gen, map, seg.size, cores = 1)
Arguments
bed
BED file with fully processed with 7 columns
("Chromosome","start","end","type","score","strand","signal").
gen
complete maf file with chromosome, chromosome start/end, sample ID
map
Start and end positions of all genes in the genome (or interest)
seg.size
Size of segments to be used.
Value
dat a data frame with the name of genes, their positions and their
estimated chromatin access and TMB.
AxelitoMartin/BedMap documentation built on April 24, 2020, 12:02 a.m.
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Description Usage Arguments Value
View source: R/get_gene_chrom_TMB.R
Description
Combines bed files with WGS/WXS/IMPACT genes for chromatin accessibility and TMB
Usage
1 | get_gene_chrom_TMB(bed, gen, map, seg.size, cores = 1)
|
Arguments
bed |
BED file with fully processed with 7 columns ("Chromosome","start","end","type","score","strand","signal"). |
gen |
complete maf file with chromosome, chromosome start/end, sample ID |
map |
Start and end positions of all genes in the genome (or interest) |
seg.size |
Size of segments to be used. |
Value
dat a data frame with the name of genes, their positions and their estimated chromatin access and TMB.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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