greenThresh: Thresholds a 'Frames' object for green pixels
In Ayan1/Cell-Trajectory-Analysis: Functions for biological trajectory analysis and video processing
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Green pixels, or pixels with H value between 61/360 and 140/360 and
S value over 0.15 in the HSV color scheme, are treated as foreground.
All other pixels are treated as background. This is useful for detecting the
Green Flourescence Protein used to denote that a cell is alive.
Usage
1
greenThresh(frames)
Arguments
frames
A Frames object with all 3 color channels(R,G,B)
Value
a binary Frames object in the green color channel
Author(s)
Ayan Bandyopadhyay, Bellarmine College Prep 11/26/2015
Examples
1
2
library(flowcatchR)
threshedFrames <- greenThresh(MesenteriumSubset)
Ayan1/Cell-Trajectory-Analysis documentation built on May 5, 2019, 9:23 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Green pixels, or pixels with H value between 61/360 and 140/360 and S value over 0.15 in the HSV color scheme, are treated as foreground. All other pixels are treated as background. This is useful for detecting the Green Flourescence Protein used to denote that a cell is alive.
Usage
1 | greenThresh(frames)
|
Arguments
frames |
A |
Value
a binary Frames object in the green color channel
Author(s)
Ayan Bandyopadhyay, Bellarmine College Prep 11/26/2015
Examples
1 2 | library(flowcatchR)
threshedFrames <- greenThresh(MesenteriumSubset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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