Description Usage Arguments Value Examples
A wrapper to run WGCNA with certain options in a particular order
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dat |
A data.frame of transposed expression matrix |
power |
An integer power of the adjacency matrix |
A list of 9 items:
adj A matrix, the adjacency matrix result of adjacency
tom A matrix, the TOM similarity matrix result of TOMsimilarity
diss A matrix, the dissimilary matrix (1 - tom)
modules A numeric, the assignment of each column to a module after the cutting
colors A character, the colors given to each integer in modules, result of labels2colors
mes A data.frame, the eigengenes item of calling moduleEigengenes
me_dist A matrix, the distance matrix (1 - mes)
me_tree An hclust, the hierarchial clustering object of me_dist
merged colors A character, the final lables after mergeCloseModules
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