Man pages for BIGslu/BIGpicture
Standard Plots for BIGslu
| clean_venn_upset | Format gene lists for venn or upset plots |
| example.model | kmFit example model results |
| get_hm_clust | Get data frame of genes per cluster from ComplexHeatmap... |
| map_string | Map genes to string network |
| pipe | Pipe operator |
| plot_enrich | Plot k/K for hypergeo enrichment |
| plot_enrich2 | Plotting function for hypergeometric enrichment |
| plot_fit | Model fit comparisons |
| plot_fit2 | Model fit comparisons |
| plot_genes | Plot boxplots and dotplots for genes and variables of... |
| plot_gsea | Plot GSEA normalized enrichment |
| plot_mv | Plot mean-variance trends of RNAseq gene expression |
| plot_pca | Plot PCA colored by variables of interest |
| plot_string | Plot STRING network of genes colored by enriched pathways |
| plot_upset_genes | Upset plots of significant genes |
| plot_venn_genes | Venn diagrams of significant genes |
| plot_volcano | Volcano plot of differentially expressed genes |
