map_string: Map genes to string network

In BIGslu/BIGpicture: Standard Plots for BIGslu

Map genes to string network

Description

To be used in conjunction with plot_string

Usage

map_string(genes, version = 11.5, score_threshold = 400, species = "human")

Arguments

genes	Character vector of HGNC symbols or ENSEMBL ID of genes
version	Numeric version of STRING data base. Default 11.5 which is current as of 2022-03-30
score_threshold	Numeric combined score threshold for edge inclusion in network. Default it 400 which is STRING defined "medium". 0 to 1000 allowed
species	Character string of "human" or "mouse"

Value

List containing "subgraph" and "map"

Examples

#See plot_string for full example

BIGslu/BIGpicture documentation built on Oct. 14, 2024, 9:30 p.m.