README.md
In BIMIB-DISCo/LACEinterface: LACE interface
LACEinterface
Interface for preprocessing VCF and BAM files and generating the input for
for the LACE framework.
Installation
LACEinterface is a Shiny app and
therefore requires RStudio. To install
the package with all the dependecies, devtools and
Bioconductor need to be both installed.
The R version required is greater than 3.6.3.
To install directly from GitHub run:
remotes::install_github("https://github.com/BIMIB-DISCo/LACEinterface", dependencies = TRUE)
If necessary you can add
auth_token="add_here_your_auth_token"
to the previous call; a github auth_token can be generated from:
https://github.com/settings/tokens
Dependencies
The genetic variant annotation software ANNOVAR
and the suite of programs for interacting with high-throughput
sequencing data Samtools need to be
installed.
Start LACEinterface
To run LACEinterface issue the following at the RStudio prompt:
LACEinterface::LACEView()
BIMIB-DISCo/LACEinterface documentation built on Feb. 20, 2022, 2:20 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
LACEinterface
Interface for preprocessing VCF and BAM files and generating the input for for the LACE framework.
Installation
LACEinterface is a Shiny app and
therefore requires RStudio. To install
the package with all the dependecies, devtools and
Bioconductor need to be both installed.
The R version required is greater than 3.6.3.
To install directly from GitHub run:
remotes::install_github("https://github.com/BIMIB-DISCo/LACEinterface", dependencies = TRUE)
If necessary you can add
auth_token="add_here_your_auth_token"
to the previous call; a github auth_token can be generated from:
https://github.com/settings/tokens
Dependencies
The genetic variant annotation software ANNOVAR and the suite of programs for interacting with high-throughput sequencing data Samtools need to be installed.
Start LACEinterface
To run LACEinterface issue the following at the RStudio prompt:
LACEinterface::LACEView()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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