LACEView: LACE Preprocessing and Analysis Interface
In BIMIB-DISCo/LACEinterface: LACE interface
Description
Usage
Installation
Dependencies
View source: R/LACEinterface.R
Description
LACEView displays a user interface to handle the VCF
and BAM files preprocessing that is needed to construct the input
for the LACE inference algorithms.
Usage
1
LACEView()
Installation
To install the package with all the dependecies, devtools and
Bioconductor need to be present.
The R version required is greater than 3.6.0.
To install directly from github run:
1
remotes::install_github("https://github.com/BIMIB-DISCo/LACEinterface", dependencies = T)
If necessary you can add
1
auth_token="BLAHBLAHGiuntaAlConfinDelCieloDietroApennino"
to the previous call; a github auth_token can be generated from:
https://github.com/settings/tokens
Dependencies
The genetic variant annotation software ANNOVAR
(https://annovar.openbioinformatics.org/en/latest/) and the suite
of programs for interacting with high-throughput sequencing data
Samtools (http://www.htslib.org/) need to be installed.
BIMIB-DISCo/LACEinterface documentation built on Feb. 20, 2022, 2:20 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Installation Dependencies
View source: R/LACEinterface.R
Description
LACEView displays a user interface to handle the VCF
and BAM files preprocessing that is needed to construct the input
for the LACE inference algorithms.
Usage
1 | LACEView()
|
Installation
To install the package with all the dependecies, devtools and Bioconductor need to be present.
The R version required is greater than 3.6.0.
To install directly from github run:
1 | remotes::install_github("https://github.com/BIMIB-DISCo/LACEinterface", dependencies = T)
|
If necessary you can add
1 | auth_token="BLAHBLAHGiuntaAlConfinDelCieloDietroApennino"
|
to the previous call; a github auth_token can be generated from:
https://github.com/settings/tokens
Dependencies
The genetic variant annotation software ANNOVAR (https://annovar.openbioinformatics.org/en/latest/) and the suite of programs for interacting with high-throughput sequencing data Samtools (http://www.htslib.org/) need to be installed.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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