Files in BKapili/ppit
Phylogenetic Placement for Inferring Taxonomy
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/data.R
R/data_load.R
R/patristic.distance.R
R/percent.identity.R
R/ppit.R
R/tree.partition.R
README.Rmd
README.md
data/.DS_Store
data/desulfuro_asvs.rda
data/nifH_cutoffs_v2.rda
data/nifH_example_SEPP_alignment.rda
data/nifH_example_SEPP_tree.rda
data/nifH_example_ps.rda
data/nifH_reference_RAxML_info_v2.rda
data/nifH_reference_alignment_v2.rda
data/nifH_reference_taxonomy_v2.rda
data/nifH_reference_tree_v2.rda
logo/PPIT_logo_v1.png
man/.DS_Store
man/.Rapp.history
man/nifH_cutoffs_v2.Rd
man/nifH_example_SEPP_alignment.Rd
man/nifH_example_ps.Rd
man/nifH_reference_RAxML_info_v2.Rd
man/nifH_reference_alignment_v2.Rd
man/nifH_reference_taxonomy_v2.Rd
man/nifH_reference_tree_v2.Rd
man/patristic.distance.Rd
man/percent.identity.Rd
man/ppit.Rd
man/tree.partition.Rd
tutorial/ppit_tutorial.Rmd
tutorial/ppit_tutorial.md
tutorial/ppit_tutorial_files/figure-gfm/example-desulfuromonadales-1.png
tutorial/ppit_tutorial_files/figure-gfm/example-desulfuromonadales-2.png
tutorial/ppit_tutorial_files/figure-gfm/example-desulfuromonadales-3.png
tutorial/ppit_tutorial_files/figure-gfm/example-relative-abundance-1.png
vignettes/.DS_Store
vignettes/.build.timestamp
vignettes/.gitignore
vignettes/ppit_tutorial.Rmd
