nifH_reference_RAxML_info_v2: RAxML info file for SEPP placement (v.1.2.0)
In BKapili/ppit: Phylogenetic Placement for Inferring Taxonomy
Description
Usage
Format
Source
Description
RAxML info file generated during construction of nifH_reference_tree_v2. To be used with SEPP (Mirarab et al., 2012) for insertion of nifH query sequences
into reference nifH alignment and tree
Usage
1
Format
Data frame object with 11477 rows and 1 column.
Source
BJ Kapili and AE Dekas. PPIT: an R package for inferring microbial taxonomy from nifH sequences. In prep.
BKapili/ppit documentation built on July 23, 2020, 1:52 a.m.
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Description Usage Format Source
Description
RAxML info file generated during construction of nifH_reference_tree_v2. To be used with SEPP (Mirarab et al., 2012) for insertion of nifH query sequences
into reference nifH alignment and tree
Usage
1 |
Format
Data frame object with 11477 rows and 1 column.
Source
BJ Kapili and AE Dekas. PPIT: an R package for inferring microbial taxonomy from nifH sequences. In prep.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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