patristic.distance: Calculate patristic distances between query and reference...
In BKapili/ppit: Phylogenetic Placement for Inferring Taxonomy
Description
Usage
Arguments
Value
View source: R/patristic.distance.R
Description
Wrapper function that reformats the patristic distance output from the cophenetic
function in ape. Distance matrix output
reformatted to have query sequences as rows and reference sequences as columns.
Usage
1
patristic.distance(query, tree)
Arguments
query
Vector of query sequence names.
tree
Phylogenetic tree in Newick format containing query sequences placed onto a reference tree.
Value
An object of class "dist"
BKapili/ppit documentation built on July 23, 2020, 1:52 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/patristic.distance.R
Description
Wrapper function that reformats the patristic distance output from the cophenetic
function in ape. Distance matrix output
reformatted to have query sequences as rows and reference sequences as columns.
Usage
1 | patristic.distance(query, tree)
|
Arguments
query |
Vector of query sequence names. |
tree |
Phylogenetic tree in Newick format containing query sequences placed onto a reference tree. |
Value
An object of class "dist"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.