Man pages for BMILAB/AStrap
Identificantion of alternative splicing events and classificaiton of alternative splicing types
| AStrap | Identification AS events and classification AS types. |
| buildTrainModel | Classification models. |
| extract_IsoSeq_ge | Extract the sequence around splice sites based on genome. |
| extract_IsoSeq_tr | Extract the sequence around splice sites based on transcript. |
| getFeature | Feature construction. |
| plotAlign | Network graph showing identities of pairwise alignments in a... |
| plotAS | Plotting a AS event. |
| plotCluster | Network graph showing the distribution of isoforms in a... |
| plotGain | Attribute Evaluators. |
| plotROC | Plotting a ROC curve |
| readCDHIT | Read the clusters from a file. |
| readGMAP | Read the pairwise sequence alignments from a file. |
| reCluster | Adjusting the cluster. |
| trimmGMAP | Alignment trimming |
