plotAlign: Network graph showing identities of pairwise alignments in a...

In BMILAB/AStrap: Identificantion of alternative splicing events and classificaiton of alternative splicing types

Description

This function plot pairwise alignments of isoforms of the same cluster network graph. It shows the relationship between isoforms of the same cluster, where the identity of a pairwise alignment is denoted as a line with different thickness and color. The higher the identity, the thicker the line. Red line denotes the identity of 1.

Usage

plotAlign(alignment, cluster.id = c("2"))

Arguments

alignment	A data frame contation the information of sequence alignments.
cluster.id	An interger vector indicating the ID of cluster.

Value

This function returns a network graph object invisibly.

Examples

##Loading example data
load(system.file("data","example_cluster.Rdata",package = "AStrap"))
g <- plotAlign(cluster.align$alignment,cluster.id=c("7","5"))
plot(g)

BMILAB/AStrap documentation built on Nov. 20, 2020, 4:03 p.m.