API for BPerezLamarque/HOME
Phylogenetic Models of HOst-Microbiota Evolution
| Global functions | |
|---|---|
| HOME_model | Man page Source code |
| LL | Source code |
| LL_tree | Source code |
| L_computation | Source code |
| example_great_apes_microbiota | Man page Source code |
| fit_HOME | Man page Source code |
| get_tip_label | Source code |
| great_apes_microbiota | Man page |
| independent_evolution | Source code |
| inference_switches | Source code |
| inference_vertical_transmission | Source code |
| llpruning | Source code |
| model_selection_HOME | Man page Source code |
| output_results_HOME | Man page Source code |
| plot_simulated_switches | Source code |
| prepare_data_HOME | Man page Source code |
| rescale_tree | Source code |
| resume_PHS_random | Source code |
| resume_switches | Source code |
| resume_switches_all | Source code |
| selection_vertical_transmission | Source code |
| sim_duplications_tree | Source code |
| sim_microbiota | Man page Source code |
| simul_bank_tree | Man page Source code |
| simulate_OTU_alignment | Source code |
| simulate_alignment | Man page Source code |
| simulate_uniform_PHS | Source code |
| tree_change | Source code |
| tree_change_geo_dependent | Source code |
| tree_change_given_switches | Source code |
| tree_change_host_dependent | Source code |
| tree_change_temporal | Source code |
| tree_switch | Source code |
| vmult | Source code |
| vvmult | Source code |
| vvvmult | Source code |
