great_apes_microbiota: Example of great apes microbiota
In BPerezLamarque/HOME: Phylogenetic Models of HOst-Microbiota Evolution
great_apes_microbiota R Documentation
Example of great apes microbiota
Description
Phylogenetic tree of the great apes and example of three bacterial nucleotidic alignments (16S rRNA gene).
Usage
data(great_apes_microbiota)
Author(s)
Benoit Perez-Lamarque
References
Ochman H, Worobey M, Kuo CH, Ndjango JBN, Peeters M, Hahn BH, Hugenholtz P (2010). Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biology, 8(11), 3-10. https://doi.org/10.1371/journal.pbio.1000546.
Sanders JG, Powell S, Kronaue DJC, Vasconcelos HL, Fredrickson ME, Pierce NE (2014). Data from: Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes. Dryad Digital Repository, https://doi.org/10.5061/dryad.023s6.
Perez-Lamarque B, Morlon H (2019). Characterizing symbiont inheritance during host-microbiota evolution: Application to the great apes gut microbiota. Molecular Ecology Resources 19:1659-1671.
See Also
example_great_apes_microbiota,
HOME_model
Examples
data(great_apes_microbiota, envir = environment())
BPerezLamarque/HOME documentation built on May 17, 2023, 7:02 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| great_apes_microbiota | R Documentation |
Example of great apes microbiota
Description
Phylogenetic tree of the great apes and example of three bacterial nucleotidic alignments (16S rRNA gene).
Usage
data(great_apes_microbiota)
Author(s)
Benoit Perez-Lamarque
References
Ochman H, Worobey M, Kuo CH, Ndjango JBN, Peeters M, Hahn BH, Hugenholtz P (2010). Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biology, 8(11), 3-10. https://doi.org/10.1371/journal.pbio.1000546.
Sanders JG, Powell S, Kronaue DJC, Vasconcelos HL, Fredrickson ME, Pierce NE (2014). Data from: Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes. Dryad Digital Repository, https://doi.org/10.5061/dryad.023s6.
Perez-Lamarque B, Morlon H (2019). Characterizing symbiont inheritance during host-microbiota evolution: Application to the great apes gut microbiota. Molecular Ecology Resources 19:1659-1671.
See Also
example_great_apes_microbiota,
HOME_model
Examples
data(great_apes_microbiota, envir = environment())
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.