| example_great_apes_microbiota | Example of empirical application of HOME |
| fit_HOME | General inference of HOME |
| great_apes_microbiota | Example of great apes microbiota |
| HOME_model | HOst-Microbiota Evolution model |
| model_selection_HOME | Perform the model selections of HOME |
| output_results_HOME | Representing all the results of HOME |
| prepare_data_HOME | Prepare the data for running HOME |
| sim_microbiota | Simulate microbial alignments according to different models... |
| simulate_alignment | Simulate a sequence alignment on a phylogentic tree |
| simul_bank_tree | Simulate a bank of trees for running HOME. |
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