Man pages for BPijuanSala/proSeq
Tools to preprocess RNA-seq data

cellsFailQC_access	Access cellsFailQC data
cellsFailQC_replace	Modify cellsFailQC data
CellsSizeFac_access	Access CellsSizeFac data
CellsSizeFac_replace	Modify CellsSizeFac data
clustering_access	Access clustering data
clustering_replace	Modify clustering data
CountsFeat_access	Access CountsFeat data
CountsFeat_replace	Modify CountsFeat data
countsMatrix	Example of counts
countsNorm_access	Access countsNorm data
countsNorm_replace	Modify countsNorm data
countsRaw_access	Access countsRaw data
countsRaw_replace	Modify countsRaw data
difmap_access	Access difmap data
difmap_replace	Modify difmap data
findHVG	Find highly variable genes
findHVG-DM	Find HVG with the DM approach
findHVGMatrix	Find highly variable genes
genesHVG_access	Access genesHVG data
genesHVG_replace	Modify genesHVG data
geneTable	Ensembl geneIDs - geneNames
meta	Example of metadata
metadata_access	Access metadata
metadata_replace	Modify metadata slot
normalise	Normalise single cells from 'RNAseq' object
pca_access	Access pca data
pca_replace	Modify pca data
quantileNorm	Quantile/Rank normalisation
RNAseq-class	Class RNAseq
runCellQC	Perform QC on cells from 'RNAseq' object
show_RNAseq-method	Show details of 'RNAseq' class
tsne_access	Access tsne data
tsne_replace	Modify tsne data