quantileNorm: Quantile/Rank normalisation

Description Usage Arguments Author(s) References Examples

View source: R/function_quantileNorm.R

Description

It normalises based on ranks.

Usage

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quantileNorm(data, ties.rank = "min")

Arguments

data

Dataframe or matrix containing the raw counts (genes x cells).

ties.rank

It specifies how ties are treated. See rank for further details. Default: min.

Author(s)

Blanca Pijuan-Sala.

References

https://davetang.org/muse/2014/07/07/quantile-normalisation-in-r/

Examples

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#test the function
data <- data.frame(one=c(5,2,3,4),
                   two=c(4,1,4,2),
                   three=c(3,4,6,8)
)
rownames(data) <- toupper(letters[1:4])
quantileNorm(data)

BPijuanSala/proSeq documentation built on Oct. 10, 2018, 7:20 p.m.