proSeq: Tools to preprocess RNA-seq data

Description Usage Arguments Author(s) References Examples

It normalises based on ranks.

1	quantileNorm(data, ties.rank = "min")

`data`	Dataframe or matrix containing the raw counts (genes x cells).
`ties.rank`	It specifies how ties are treated. See `rank` for further details. Default: min.

Blanca Pijuan-Sala.

https://davetang.org/muse/2014/07/07/quantile-normalisation-in-r/

#test the function
data <- data.frame(one=c(5,2,3,4),
                   two=c(4,1,4,2),
                   three=c(3,4,6,8)
)
rownames(data) <- toupper(letters[1:4])
quantileNorm(data)