overlapScore: overlapScore

In Babulab-bioc/MSiP: 'MassSpectrometry' Interaction Prediction

Description

This function computes the overlap similarity scores for instances (e.g., bait-prey interactions (BPIs)) in the data.frame.

Usage

overlapScore(datInput)

Arguments

datInput

Data frame with column names: Experiment.id, Replicate, Bait, Prey, and count (i.e., prey count).

Value

Data frame containing bait-prey pairs with the overlap score, a number between 0 and 1

Author(s)

Matineh Rahmatbakhsh, [e-mail]

References

Nepusz, T., Yu, H., and Paccanaro, A. (2012a). Detecting overlapping protein complexes in protein-protein interaction networks. Nat. Methods 9, 471.

Examples

data(SampleDatInput)
datScoring <- overlapScore(SampleDatInput)
head(datScoring)

Babulab-bioc/MSiP documentation built on Dec. 17, 2021, 9:52 a.m.