IdentifyVaryingPWs: Calculate temporally changing pathways

In BaderLab/Tempora: Pathway-based Trajectory Inference for Time-series Single Cell RNA-Seq Data

Description

Identify the pathways that change over time by fitting a generalized additive model

Usage

IdentifyVaryingPWs(object, pval_threshold = 0.05)

Arguments

object	A Tempora object
pval_threshold	P-value threshold to determine the significance of pathway enrichment over time. Default to 0.05.

Examples

## Not run: tempora_data <- IdentifyVaryingPWs(tempora_data, pval_threshold = 0.05)

BaderLab/Tempora documentation built on April 25, 2021, 2:10 p.m.