getMD: Get metadata from input data object

In BaderLab/Tempora: Pathway-based Trajectory Inference for Time-series Single Cell RNA-Seq Data

Description

Extract the cell metadata data frame from a single-cell data object containing the input data for scClustViz visualization.

Usage

getMD(x)

Arguments

x	The single-cell data object.

Details

This is a wrapper function to the relevant class's cell metadata slot accessor / assignment method. Currently supported input object classes:

• Class seurat/Seurat accessed by [e-mail] or [e-mail], depending on Seurat object version.

• Class SingleCellExperiment accessed by colData(x).

Please submit requests for other data objects here!

Author(s)

Contributed by Brendan Innes from the BaderLab/scClustViz package

BaderLab/Tempora documentation built on April 25, 2021, 2:10 p.m.