generate_ss3 | R Documentation |
Generate frequently used input data for Stock Synthesis 3
generate_ss3(
file_path,
r0,
r0_phase = 1,
steepness,
sigmar,
projection_f,
projection_catch = NULL,
sa_data,
model_year,
projection_year,
use_depletion = FALSE,
depletion_ratio = NULL,
initial_equilibrium_catch = TRUE,
settlement_age = 0
)
file_path |
A file path to a directory where the assessment input and output files will be saved. |
r0 |
Unexploited recruitment from Beverton-Holt stock-recruitment model. |
r0_phase |
Phase for Unexploited recruitment from Beverton-Holt stock-recruitment model. Default value is 1. |
steepness |
Steepness from Beverton-Holt stock-recruitment model. Recruitment relative to unfished recruitment at 20% of unfished spawning biomass. |
sigmar |
Standard deviation of log recruitment. |
projection_f |
Fishing mortality inputs for projections. |
projection_catch |
Catch inputs for projections. |
sa_data |
Simulated stock assessment input data from Rscript/simulation.R. |
model_year |
A vector of years for model fitting. |
projection_year |
A vector of years for projection. |
use_depletion |
A logical value. |
depletion_ratio |
Ratio of depletion. |
initial_equilibrium_catch |
TRUE or FALSE. |
settlement_age |
Settlement age. Default value is age 0. |
Outputs from Stock Synthesis 3
## Not run:
generate_ss3(
file_path = here::here("data", "data_rich"),
r0 = 12, steepness = 0.5, sigmar =0.25,
projection_f = 0.75, projection_catch = NULL,
sa_data = sa_data, model_year = 1985:2012,
projection_year = 2013:2017,
use_depletion = FALSE, depletion_ratio = NULL
)
## End(Not run)
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