Files in BaileyLabUM/biosensor
Analyzes raw data from biosensors, specifically, the Maverick M1 detection system from Genalyte, Inc
.RData
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/aggData.R
R/aggRuns.R
R/analyzeBiosensorData.R
R/calibrationStation.R
R/checkRingQuality.R
R/chopUpRun.R
R/combineMultiShifts.R
R/combineNetShifts.R
R/compLabelNorm.R
R/cytometry.R
R/doEverything.R
R/fitBindingKd.R
R/fitCalCurves.R
R/fitMultiCurves.R
R/getCalNetShifts.R
R/getName.R
R/getNetShifts.R
R/labelRuns.R
R/multiNetShift.R
R/normLabelRuns.R
R/plotCombinedNetShifts.R
R/plotDataRoutine.R
R/plotEachTar.R
R/plotEachTxt.R
R/plotFullSet.R
R/plotMultiShifts.R
R/plotNetShifts.R
R/plotRingData.R
R/plotTxt.R
R/subtractControl.R
R/txtComp.R
README.Rmd
README.md
Target Plots/h-HIF1aPro564_boxplot.png
Target Plots/h-HIF1aPro564_boxplot_2.png
Target Plots/h-HIF1aPro564_point.png
Target Plots/pAktSer473_boxplot.png
Target Plots/pAktSer473_boxplot_2.png
Target Plots/pAktSer473_point.png
Target Plots/pAktThr308_boxplot.png
Target Plots/pAktThr308_boxplot_2.png
Target Plots/pAktThr308_point.png
Target Plots/pGSK3bSer9_boxplot.png
Target Plots/pGSK3bSer9_boxplot_2.png
Target Plots/pGSK3bSer9_point.png
Target Plots/pMAPKThr202_boxplot.png
Target Plots/pMAPKThr202_boxplot_2.png
Target Plots/pMAPKThr202_point.png
Target Plots/pPDK1Ser341_boxplot.png
Target Plots/pPDK1Ser341_boxplot_2.png
Target Plots/pPDK1Ser341_point.png
Target Plots/pRbSer780_boxplot.png
Target Plots/pRbSer780_boxplot_2.png
Target Plots/pRbSer780_point.png
Target Plots/pRbSer807_boxplot.png
Target Plots/pRbSer807_boxplot_2.png
Target Plots/pRbSer807_point.png
Target Plots/pS6Ser235_boxplot.png
Target Plots/pS6Ser235_boxplot_2.png
Target Plots/pS6Ser235_point.png
Target Plots/pS6Ser240_boxplot.png
Target Plots/pS6Ser240_boxplot_2.png
Target Plots/pS6Ser240_point.png
Target Plots/pSrcTyr416_boxplot.png
Target Plots/pSrcTyr416_boxplot_2.png
Target Plots/pSrcTyr416_point.png
Target Plots/pc-AblTyr204_boxplot.png
Target Plots/pc-AblTyr204_boxplot_2.png
Target Plots/pc-AblTyr204_point.png
Target Plots/pmTORSer2448_boxplot.png
Target Plots/pmTORSer2448_boxplot_2.png
Target Plots/pmTORSer2448_point.png
Target Plots/pp53Ser15_boxplot.png
Target Plots/pp53Ser15_boxplot_2.png
Target Plots/pp53Ser15_point.png
Target Plots/pp70S6KThr389_boxplot.png
Target Plots/pp70S6KThr389_boxplot_2.png
Target Plots/pp70S6KThr389_point.png
biosensor.Rproj
fitMultiCurves.R
inst/extdata/20171112_gaskTestData_MRR/03.csv
inst/extdata/20171112_gaskTestData_MRR/04.csv
inst/extdata/20171112_gaskTestData_MRR/05.csv
inst/extdata/20171112_gaskTestData_MRR/06.csv
inst/extdata/20171112_gaskTestData_MRR/07.csv
inst/extdata/20171112_gaskTestData_MRR/08.csv
inst/extdata/20171112_gaskTestData_MRR/09.csv
inst/extdata/20171112_gaskTestData_MRR/10.csv
inst/extdata/20171112_gaskTestData_MRR/100.csv
inst/extdata/20171112_gaskTestData_MRR/101.csv
inst/extdata/20171112_gaskTestData_MRR/102.csv
inst/extdata/20171112_gaskTestData_MRR/103.csv
inst/extdata/20171112_gaskTestData_MRR/104.csv
inst/extdata/20171112_gaskTestData_MRR/105.csv
inst/extdata/20171112_gaskTestData_MRR/106.csv
inst/extdata/20171112_gaskTestData_MRR/107.csv
inst/extdata/20171112_gaskTestData_MRR/108.csv
inst/extdata/20171112_gaskTestData_MRR/11.csv
inst/extdata/20171112_gaskTestData_MRR/117.csv
inst/extdata/20171112_gaskTestData_MRR/118.csv
inst/extdata/20171112_gaskTestData_MRR/119.csv
inst/extdata/20171112_gaskTestData_MRR/12.csv
inst/extdata/20171112_gaskTestData_MRR/120.csv
inst/extdata/20171112_gaskTestData_MRR/121.csv
inst/extdata/20171112_gaskTestData_MRR/122.csv
inst/extdata/20171112_gaskTestData_MRR/123.csv
inst/extdata/20171112_gaskTestData_MRR/124.csv
inst/extdata/20171112_gaskTestData_MRR/125.csv
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inst/extdata/20171112_gaskTestData_MRR/128.csv
inst/extdata/20171112_gaskTestData_MRR/129.csv
inst/extdata/20171112_gaskTestData_MRR/13.csv
inst/extdata/20171112_gaskTestData_MRR/130.csv
inst/extdata/20171112_gaskTestData_MRR/131.csv
inst/extdata/20171112_gaskTestData_MRR/132.csv
inst/extdata/20171112_gaskTestData_MRR/135.csv
inst/extdata/20171112_gaskTestData_MRR/136.csv
inst/extdata/20171112_gaskTestData_MRR/14.csv
inst/extdata/20171112_gaskTestData_MRR/15.csv
inst/extdata/20171112_gaskTestData_MRR/16.csv
inst/extdata/20171112_gaskTestData_MRR/17.csv
inst/extdata/20171112_gaskTestData_MRR/18.csv
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inst/extdata/20171112_gaskTestData_MRR/32.csv
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inst/extdata/20171112_gaskTestData_MRR/34.csv
inst/extdata/20171112_gaskTestData_MRR/35.csv
inst/extdata/20171112_gaskTestData_MRR/36.csv
inst/extdata/20171112_gaskTestData_MRR/37.csv
inst/extdata/20171112_gaskTestData_MRR/38.csv
inst/extdata/20171112_gaskTestData_MRR/39.csv
inst/extdata/20171112_gaskTestData_MRR/40.csv
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inst/extdata/20171112_gaskTestData_MRR/60.csv
inst/extdata/20171112_gaskTestData_MRR/61.csv
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inst/extdata/20171112_gaskTestData_MRR/63.csv
inst/extdata/20171112_gaskTestData_MRR/64.csv
inst/extdata/20171112_gaskTestData_MRR/66.csv
inst/extdata/20171112_gaskTestData_MRR/67.csv
inst/extdata/20171112_gaskTestData_MRR/68.csv
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inst/extdata/20171112_gaskTestData_MRR/80.csv
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inst/extdata/20171112_gaskTestData_MRR/82.csv
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inst/extdata/20171112_gaskTestData_MRR/90.csv
inst/extdata/20171112_gaskTestData_MRR/91.csv
inst/extdata/20171112_gaskTestData_MRR/92.csv
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inst/extdata/20171112_gaskTestData_MRR/94.csv
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inst/extdata/20171112_gaskTestData_MRR/96.csv
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inst/extdata/20171112_gaskTestData_MRR/98.csv
inst/extdata/20171112_gaskTestData_MRR/99.csv
inst/extdata/20171112_gaskTestData_MRR/groupNames_XPP.csv
inst/extdata/sampleChipLayout/groupNames_Example.csv
inst/extdata/sampleChipLayout/multiNetShifts.csv
man/aggData.Rd
man/aggRuns.Rd
man/analyzeBiosensorData.Rd
man/calibrationStation.Rd
man/chopUpRun.Rd
man/compLabelNorm.Rd
man/doEverything.Rd
man/labelRuns.Rd
man/plotDataRoutine.Rd
multiNetShifts.csv
