aggData: Aggregate M1 Data Files

In BaileyLabUM/biosensor: Analyzes raw data from biosensors, specifically, the Maverick M1 detection system from Genalyte, Inc

Description

The purpose of this function is to aggregate all the individual ring files into a single csv file. The function requires a chip layout file that specifies the identity of each ring sensor.

Usage

aggData(loc = "plots", getLayoutFile = FALSE,
  filename = "groupNames_allClusters.csv", fsr = FALSE, fsrThresh = 3000,
  name)

Arguments

loc	a string with directory name to save plots and data files
getLayoutFile	a logical value indicating if the chip layout file should be downloaded from Github
filename	a string with the filename containing the chip layout
fsr	a logical value indicating whether the data contains FSR shifts
fsrThresh	a numerical value specifying the minimum difference between two time points to be considered an FSF shift
name	a string for naming files

Value

The function outputs a single csv file in the 'loc' directory and is named "NAME_allRings.csv", where NAME is defined using the main directory name. If the main directory has is names "20171112_gaskTestData_MRR", then the output file will be named "TestData_allRings.csv".

BaileyLabUM/biosensor documentation built on May 28, 2019, 11:36 a.m.