overlapCalc: Calculates nucleotide overlap only
In Bao-Lab/GPSmatch: Compares and Ranks the Similarities of Bed Files
Description
Usage
Arguments
Value
Examples
Description
The function calculates the nucleotide overlap between two bed files (query and hit).
Usage
1
overlapCalc(bed1, pwd)
Arguments
bed1
The file path of a query bed file to be compared to the database files.
bed2
The file path of a bed file in the database files to be compared to the query file.
Value
A value of the nucleotide overlap. To be used as an internal function for PValue_nt and GPSMatch_nt.
Examples
1
overlapCalc("/dir/bed1.txt","/dir/bed2.txt")
Bao-Lab/GPSmatch documentation built on Dec. 17, 2021, 10:45 a.m.
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Description Usage Arguments Value Examples
Description
The function calculates the nucleotide overlap between two bed files (query and hit).
Usage
1 | overlapCalc(bed1, pwd)
|
Arguments
bed1 |
The file path of a query bed file to be compared to the database files. |
bed2 |
The file path of a bed file in the database files to be compared to the query file. |
Value
A value of the nucleotide overlap. To be used as an internal function for PValue_nt and GPSMatch_nt.
Examples
1 | overlapCalc("/dir/bed1.txt","/dir/bed2.txt")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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