creatingMatrix: Creation of the scores matrix
In BeatriceBa/RProjectNW: Perform Needleman-Wunsch algorithm

Description Usage Arguments Value Examples

View source: R/NeedlemanWunsch.R

creatingMatrix creates a matrix containing the scores of the alignment for the NW algorithm

1	creatingMatrix(matchCost, mismatchCost, gapPenalty, sequenceA, sequenceB)

`matchCost`	The cost of a match
`mismatchCost`	The cost of a mismatch
`gapPenalty`	The gap penalty(cost of gap/indel)
`sequenceA`	The first nucleotide sequence (positioned on the rows)
`sequenceB`	The second nucleotide sequence (positioned on the columns)

A matrix containing the scores of the alignment

sequenceA <- "GTT"
sequenceB <- "GCATT"
matchCost <- 7
mismatchCost <- -3
gapPenalty <- -4
scoreMatrix <- creatingMatrix(matchCost,mismatchCost,gapPenalty,sequenceA,sequenceB)