performTraceback: Traceback function
In BeatriceBa/RProjectNW: Perform Needleman-Wunsch algorithm
Description
Usage
Arguments
Value
Examples
View source: R/NeedlemanWunsch.R
Description
performTraceback is a function that creates a matrix with the directions of the alignment while computing the alignment itself
Usage
1
performTraceback(matrix, sequenceA, sequenceB)
Arguments
matrix
The score matrix computed with the two sequences
sequenceA
The first nucleotide sequence (positioned on the rows)
sequenceB
The second nucleotide sequence (positioned on the columns)
Value
a list containing the directionMatrix, the first alignment, the second alignment
Examples
1
isItAMatch("GTT","GCATT",1,2)
BeatriceBa/RProjectNW documentation built on Dec. 17, 2021, 10:47 a.m.
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Description Usage Arguments Value Examples
View source: R/NeedlemanWunsch.R
Description
performTraceback is a function that creates a matrix with the directions of the alignment while computing the alignment itself
Usage
1 | performTraceback(matrix, sequenceA, sequenceB)
|
Arguments
matrix |
The score matrix computed with the two sequences |
sequenceA |
The first nucleotide sequence (positioned on the rows) |
sequenceB |
The second nucleotide sequence (positioned on the columns) |
Value
a list containing the directionMatrix, the first alignment, the second alignment
Examples
1 | isItAMatch("GTT","GCATT",1,2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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