gmean_byelt: Geometric mean (gmean) by elements occurring within the...
In BenitoJaillard/combinAna: Element clustering that best accounts for an assembly property or function
Description
Usage
Arguments
Details
Value
Description
The numeric vector fctMot get together the properties
of assemblages belonging to a same assembly motif. The properties
fctMot of assemblages containing a given element are separately
averaged. The property of each assemblage is computed as the average
of mean values of assemblages containing the same elements as the
considered assemblage. The elemental composition of each assemblage
is specified in the binary matrix mOccurMot: 0
if the element does not occur, 1 if the element occurs.
Usage
1
gmean_byelt(fctMot, mOccurMot)
Arguments
fctMot
a vector of numeric values (assembly properties).
mOccurMot
a matrix of occurrence (occurrence of elements).
Its first dimension equals to length(fctMot). Its second
dimension equals to the number of elements.
Details
Prediction is computed using geometric mean gmean
by element byelt occurring within the assemblage and other
assemblages of a same motif, by including all assemblages belonging
to a same motif, even the one to predict.
Value
Return a vector of length(fctMot), of which values
are computed as an geometric mean.
BenitoJaillard/combinAna documentation built on May 9, 2019, 2:17 a.m.
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Description Usage Arguments Details Value
Description
The numeric vector fctMot get together the properties
of assemblages belonging to a same assembly motif. The properties
fctMot of assemblages containing a given element are separately
averaged. The property of each assemblage is computed as the average
of mean values of assemblages containing the same elements as the
considered assemblage. The elemental composition of each assemblage
is specified in the binary matrix mOccurMot: 0
if the element does not occur, 1 if the element occurs.
Usage
1 | gmean_byelt(fctMot, mOccurMot)
|
Arguments
fctMot |
a vector of numeric values (assembly properties). |
mOccurMot |
a matrix of occurrence (occurrence of elements).
Its first dimension equals to |
Details
Prediction is computed using geometric mean gmean
by element byelt occurring within the assemblage and other
assemblages of a same motif, by including all assemblages belonging
to a same motif, even the one to predict.
Value
Return a vector of length(fctMot), of which values
are computed as an geometric mean.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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