architect: Computing Traits Describing The Global Tree Architecture
In BenjaminDelory/topotree: Topological Analysis of Tree Architectures using Persistent Homology
Description
Usage
Arguments
Value
Author(s)
See Also
Description
Calculation of common architectural traits from a QSM output file.
Usage
1
architect(inputqsm)
Arguments
inputqsm
A qsmToTable object.
Value
Returns a data frame summarizing all architectural traits calculated for the QSM file located in /inputqsm.
The data frame contains the following columns:
FileName: the name of the QSM file.
TBL: the total length of branches.
L0B: the length of the zero-order branch.
TN0B: the total number of zero-order branches.
TNLB: the total number of lateral branches.
TLBL: the total length of lateral branches.
NxLB: the total number of lateral branches with a branching order equal to x.
LxLB: the total length of lateral branches with a branching order equal to x.
MLxLB: the mean length of lateral branches with a branching order equal to x.
D1LB: the density of first-order branches on the zero-order branch.
Height: the tree height.
Width: the tree width.
Convexhull3D: the volume of the 3D convex hull.
Volume: the tree volume.
Surface: the tree surface area.
DBH: diameter at breast height.
Author(s)
Benjamin M. Delory
See Also
BenjaminDelory/topotree documentation built on Sept. 28, 2019, 7:15 a.m.
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Description Usage Arguments Value Author(s) See Also
Description
Calculation of common architectural traits from a QSM output file.
Usage
1 | architect(inputqsm)
|
Arguments
inputqsm |
A qsmToTable object. |
Value
Returns a data frame summarizing all architectural traits calculated for the QSM file located in /inputqsm.
The data frame contains the following columns:
FileName: the name of the QSM file.
TBL: the total length of branches.
L0B: the length of the zero-order branch.
TN0B: the total number of zero-order branches.
TNLB: the total number of lateral branches.
TLBL: the total length of lateral branches.
NxLB: the total number of lateral branches with a branching order equal to x.
LxLB: the total length of lateral branches with a branching order equal to x.
MLxLB: the mean length of lateral branches with a branching order equal to x.
D1LB: the density of first-order branches on the zero-order branch.
Height: the tree height.
Width: the tree width.
Convexhull3D: the volume of the 3D convex hull.
Volume: the tree volume.
Surface: the tree surface area.
DBH: diameter at breast height.
Author(s)
Benjamin M. Delory
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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