bottleneckdist: Computing a Pairwise Bottleneck Distance Matrix
In BenjaminDelory/topotree: Topological Analysis of Tree Architectures using Persistent Homology
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
View source: R/bottleneckdist.R
Description
Computing a pairwise distance matrix using a bottleneck distance method for the comparison of persistence barcodes.
Usage
1
bottleneckdist(x, show.progress=FALSE)
Arguments
x
A list of persistence barcodes. Mandatory.
show.progress
A logical value. Should a progress bar be shown in the R console? Yes is TRUE, No is FALSE.
Details
The bottleneck distance between two persistence barcodes is calculated with the bottleneck function of the TDA package (Fasy et al (2017)). An error message will be returned if TDA is not available.
show.progress=TRUE can only be used if x contains more than one element.
Value
Returns a pairwise distance matrix.
Author(s)
Benjamin M. Delory
References
Fasy B.T., Kim J., Lecci F., Maria C., Millman D.L., Rouvreau V. (2018). TDA: Statistical Tools for Topological Data Analysis. https://CRAN.R-project.org/package=TDA.
See Also
BenjaminDelory/topotree documentation built on Sept. 28, 2019, 7:15 a.m.
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Description Usage Arguments Details Value Author(s) References See Also
View source: R/bottleneckdist.R
Description
Computing a pairwise distance matrix using a bottleneck distance method for the comparison of persistence barcodes.
Usage
1 | bottleneckdist(x, show.progress=FALSE)
|
Arguments
x |
A list of persistence barcodes. Mandatory. |
show.progress |
A logical value. Should a progress bar be shown in the R console? Yes is TRUE, No is FALSE. |
Details
The bottleneck distance between two persistence barcodes is calculated with the bottleneck function of the TDA package (Fasy et al (2017)). An error message will be returned if TDA is not available.
show.progress=TRUE can only be used if x contains more than one element.
Value
Returns a pairwise distance matrix.
Author(s)
Benjamin M. Delory
References
Fasy B.T., Kim J., Lecci F., Maria C., Millman D.L., Rouvreau V. (2018). TDA: Statistical Tools for Topological Data Analysis. https://CRAN.R-project.org/package=TDA.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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