R/CR_probes-data.R

In BenjaminPlanterose/UMtools: An R-package for analysing Illumina DNA Methylation arrays at the fluorescence intensity level

#' List of in silico-predicted cross-reactive probes in the Illumina Infinium HumanMethylation450 Beadchip microarray
#' @description A compilation of 41,993 cross-reactive (CR) probes obtained by combining the CR-lists
#' from Price \emph{et al} (\strong{2013}) and Chen \emph{et al} (\strong{2013}). For the list of Price \emph{et al},
#' we included both autosomal and allosomal hits (A_YES or XY_YES).
#' @docType data
#' @usage data(CR_probes)
#' @format An object of class vector
#' @keywords datasets
#' @references
#' [1] Chen \emph{et al} (\strong{2013}). Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray.
#' \emph{Epigenetics}. 2013 Feb;8(2):203-9. doi: 10.4161/epi.23470. Epub 2013 Jan 11.
#'
#' [2] Price \emph{et al} (\strong{2013}). Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array
#' \emph{Epigenetics Chromatin}. 2013 Mar 3;6(1):4. doi: 10.1186/1756-8935-6-4.
#'
#' @examples
#' data(CR_probes)
"CR_probes"