get_mapped_barcode_indices: Find Indices of Potential Barcode Mappings
In Benji-Wagner/SequenceMapper: Map Reads to Reference Barcodes
Description
Usage
Arguments
Value
Description
get_mapped_barcode_indices takes a vector of barcodes and a single read, then
returns the indices of the barcodes that were within two hamming distance units
from the read.
Usage
1
get_mapped_barcode_indices(barcodes, read, distance_threshold = 2)
Arguments
barcodes
Character vector of reference sequences
read
Character string with the same length as each barcode in barcodes
distance_threshold
Integer specifying the Hamming distance threshold for which we want to filter barcodes
Value
Returns a vector of integers which are the indices of barcodes within 2 Hamming distance of the read
Benji-Wagner/SequenceMapper documentation built on June 6, 2019, 1:08 p.m.
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Description Usage Arguments Value
Description
get_mapped_barcode_indices takes a vector of barcodes and a single read, then
returns the indices of the barcodes that were within two hamming distance units
from the read.
Usage
1 | get_mapped_barcode_indices(barcodes, read, distance_threshold = 2)
|
Arguments
barcodes |
Character vector of reference sequences |
read |
Character string with the same length as each barcode in |
distance_threshold |
Integer specifying the Hamming distance threshold for which we want to filter barcodes |
Value
Returns a vector of integers which are the indices of barcodes within 2 Hamming distance of the read
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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