Man pages for Best-Nicklas/Dataprojekt
Simulation and Analysis of Genetic Data
| calc_gliab | Calculation of genetic liabilities |
| calc_normalization_consts | Calculation of normalization constants |
| child_gen | Generator of genotypes for children |
| cond_calc | Conditional values of mu and sigma |
| covmatrix | Calculate co-variance matrix for liability modeling |
| createRds | Create a .rds file |
| get_stats | Get statistics on how many SNPs have been correctly... |
| gibbs_sampler | Gibbs sample posterior mean genetic liabilities |
| GWAS | Perform genome wide association study (GWAS) |
| GWAX | Perform GWAS with proxy information on family case-control... |
| LTFH | Perform GWAS on posterior mean genetic liabilities (LTFH) |
| Manhattan_plot | Make a Manhattan plot from analysis data |
| OpenRds | Open a .rds file |
| pipe | Pipe operator |
| Power_plots | Create power plots from GWAS, GWAX and LTFH data |
| Prediction_cross_validation | Perform Prediction Cross-validation to determine best model |
| Predict_status | Predict Status for new data with pre-existing model |
| rnorm_trunc | Sample from a truncated normal distribution |
| RyouSick-package | RyouSick: Simulation and Analysis of Genetic Data |
| saveRds | Saving the work done to an rds object |
| sim_disease | Simulation of disease parameters |
| sim_genotypes_no_family | Simulation of genotypes with no family |
| sim_genotypes_with_family | Simulation of genotypes with family information (Fixed and... |
| verifyRds | Verification of .rds file |
