list_bgee_ref_intergenic_species: List species having Bgee reference intergenic sequences

In BgeeDB/BgeeCall: Automatic RNA-Seq present/absent gene expression calls generation

List species having Bgee reference intergenic sequences

Description

Return information related to species having Bgee reference intergenic sequences available for the selected Bgee intergenic release:

• speciesId the NCBI species ID of the species

• specieName scientific species name

• numberOfLibraries number of libraries used to generate these reference intergenic sequences

• genomeVersion version of the genome used to generate the reference intergenic sequences

If a BgeeMetadata object is provided this function retrieve the list of species using BgeeMetadata@intergenic_release. If only a 'release' is provided it will use it to retrieve the list of species. If none of them are provided the default Bgee reference intergenic release will be used.

Usage

list_bgee_ref_intergenic_species(myBgeeMetadata = NULL, release = NULL)

Arguments

myBgeeMetadata	A Reference Class BgeeMetadata object
release	A Bgee reference intergenic release name

Value

list all species having reference intergenic sequences available in the selected release

Author(s)

Julien Wollbrett

Examples

{
bgee <- new("BgeeMetadata")
list_bgee_ref_intergenic_species(myBgeeMetadata = bgee)
list_bgee_ref_intergenic_species(release = '0.2')
}

BgeeDB/BgeeCall documentation built on Nov. 10, 2023, 5:40 a.m.