setAnnotationFromObject: Set annotation_object of one UserMetadata object

In BgeeDB/BgeeCall: Automatic RNA-Seq present/absent gene expression calls generation

Set annotation_object of one UserMetadata object

Description

Method of the class UserMetadata. Set annotation_object of one UserMetadata object by using one GRanges object as input.

Usage

setAnnotationFromObject(userObject, annotationObject, annotationName)

## S4 method for signature 'UserMetadata,GRanges,character'
setAnnotationFromObject(userObject, annotationObject, annotationName = "")

Arguments

userObject	The UserMetadata object
annotationObject	object of thr GRanges S4 class
annotationName	(optional) Name of the annotation. Will be used to create folders.

Details

If no annotationName is provided the name of the file is used to create folders.

Value

An object of the class UserMetadata

Examples

{
user <- new("UserMetadata")
annotation_object <- rtracklayer::import(system.file("extdata",
"annotation.gtf", package = "BgeeCall"))
user <- setAnnotationFromObject(user, annotation_object,
                                 "annotation_name")
}

BgeeDB/BgeeCall documentation built on Nov. 10, 2023, 5:40 a.m.