PlastoGram-package: Prediction of subchloroplast localization.
In BioGenies/PlastoGram: Prediction of Subchloroplast localization

PlastoGram-package

R Documentation

Prediction of subchloroplast localization.

Description

PlastoGram is a robust ensemble model for detailed and accurate prediction of subplastid localization and origin of analysed protein. PlastoGram classifies protein as nuclear- or plastid-encoded and predicts its most probable localization considering envelope, stroma, thylakoid membrane or thylakoid lumen. For the latter, also the import pathway (Sec or Tat) is predicted. We also provide an additional function to differentiate nuclear-encoded inner and outer membrane proteins.